Basic Information
Locus ID:
Ah028258
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 5393420 | 5406033 | + | Ah028258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 81,242.00 Da | 51.20 | 66.49 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 468 | 744 | 3.66475E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 469 | 496 | 9.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 626 | 662 | 0.0025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 505 | 538 | 6.6E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 34 | 1.3E-5 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 468 | 744 | 3.11E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 444 | 595 | 6.8E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 596 | 744 | 4.9E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 706 | 744 | 0.024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 665 | 704 | 0.66 | IPR001680 |
| SMART | SM00320 | WD40_4 | 542 | 582 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 458 | 496 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 624 | 662 | 3.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 499 | 538 | 1.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 621 | 38.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 506 | 541 | 11.128319 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 8.816549 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 506 | 547 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 713 | 744 | 9.282875 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 631 | 671 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 713 | 744 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 471 | 505 | 10.307941 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 483 | 497 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 525 | 539 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 120 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_021767436.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Chenopodium quinoa] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R1F4 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology