Basic Information
Locus ID:
Ah028064
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
osmotin-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 3604158 | 3611445 | + | Ah028064 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 49,607.47 Da | 44.51 | 71.42 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09218 | TLP-PA | 26 | 240 | 5.41556E-102 | - |
| CDD | cd00195 | UBCc | 305 | 443 | 2.37392E-60 | IPR000608 |
| Pfam | PF00314 | Thaumatin family | 31 | 235 | 4.9E-70 | IPR001938 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 297 | 444 | 8.2E-51 | IPR000608 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 26 | 234 | 5.1E-66 | IPR037176 |
| SUPERFAMILY | SSF54495 | UBC-like | 291 | 446 | 2.69E-58 | IPR016135 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 25 | 240 | 1.1E-69 | IPR037176 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 288 | 449 | 3.3E-62 | IPR016135 |
| SMART | SM00205 | tha2 | 27 | 242 | 2.6E-111 | IPR001938 |
| SMART | SM00212 | ubc_7 | 295 | 452 | 2.2E-65 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 292 | 452 | 53.516468 | IPR000608 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 26 | 242 | 39.674187 | IPR001938 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 366 | 381 | - | IPR023313 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 75 | 86 | 1.0E-10 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 87 | 116 | 1.0E-10 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 26 | 38 | 1.0E-10 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28790.1 | Pathogenesis-related thaumatin superfamily protein. | 0 |
| RefSeq | XP_021720893.1 | osmotin-like protein [Chenopodium quinoa] | 0 |
| Q41350 | Osmotin-like protein OS=Solanum lycopersicum OX=4081 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LCL0 | UBC core domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23343 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7017 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028064 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g174190 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1795, Sbi_jg34726 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2960 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003169 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72996, Sgl76533 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008667, gene:ENSEOMG00000038338 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0002530, CQ.Regalona.r1.9BG0003150 |
| Apiaceae | Apium graveolens | 2 | Ag10G00496, Ag2G00881 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G007610 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696718 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.157.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G29184 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G28790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017135m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g11630.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g015070.2N, BniB06g017990.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2211 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2365 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g00480, gene.Cymno05g16470 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g00680, gene.Thate01g33880 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040530 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3824, BH02.3836, BH07.4145 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0039360, gene-QOZ80_1BG0089380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0302860.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056258 |
| Poaceae | Oryza coarctata | 2 | Oco01G024510, Oco02G025380 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g62260.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G330700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G005100, Chr05G028290 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G572500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2BG067150, gene_TRIDC3AG051480 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS2B02G461200.1.cds1, TraesCS3A02G357800.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb039050_P001, Zm00001eb239460_P001 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11510 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG16.1590, evm.TU.LG26.77, evm.TU.LG26.78 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g34260, gene.Posoc02g01600, gene.Posoc07g05100 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60437.14, evm.TU.60438.15 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24534 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10271, nbisL1-mrna-19671 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000015l.182, add.evm.TU.utg000027l.184 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015590, Maker00017837 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18475 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11772, nbisL1-mrna-14983 |
| Salicaceae | Populus euphratica | 3 | populus_peu02143, populus_peu02247, populus_peu35653 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643543 |
| Solanaceae | Solanum chilense | 1 | SOLCI003807200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005082 |
| Zosteraceae | Zostera marina | 2 | Zosma01g16510.v3.1, Zosma04g15240.v3.1 |