Basic Information
Locus ID:
Ah028053
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 3505600 | 3511539 | + | Ah028053 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 71,634.89 Da | 34.86 | 98.02 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 263 | 305 | 1.40059E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 551 | 590 | 3.5E-4 | IPR000225 |
| Pfam | PF04564 | U-box domain | 259 | 329 | 1.2E-20 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 386 | 425 | 1.7E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 428 | 466 | 3.6E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 469 | 507 | 1.1E-7 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 256 | 335 | 2.02E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 357 | 630 | 1.86E-50 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 6 | 120 | 1.9E-6 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 356 | 473 | 1.4E-26 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 259 | 332 | 9.6E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 474 | 639 | 2.2E-29 | IPR011989 |
| SMART | SM00185 | arm_5 | 509 | 549 | 18.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 427 | 467 | 0.058 | IPR000225 |
| SMART | SM00185 | arm_5 | 386 | 426 | 1.2E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 550 | 590 | 16.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 262 | 325 | 1.6E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 468 | 508 | 0.55 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 438 | 480 | 8.7324 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 397 | 439 | 12.4424 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 258 | 332 | 45.610195 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 253 | - | - |
| Coils | Coil | Coil | 616 | 647 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_021720883.1 | U-box domain-containing protein 13-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KRZ9 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology