Basic Information
Locus ID:
Ah028031
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 3236073 | 3238146 | - | Ah028031 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 42,617.53 Da | 48.13 | 90.42 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 176 | 239 | 3.3E-9 | IPR024766 |
| Pfam | PF13639 | Ring finger domain | 58 | 104 | 8.7E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 157 | 244 | 2.43E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 58 | 110 | 9.72E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 109 | 6.8E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 245 | 2.2E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 177 | 238 | 1.9E-8 | IPR001841 |
| SMART | SM00184 | ring_2 | 59 | 103 | 4.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 59 | 104 | 13.167916 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 177 | 239 | 12.120453 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28920.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021748387.1 | uncharacterized protein LOC110714206 [Chenopodium quinoa] | 0 |
| Q9FKX5 | NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L791 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 5 | Ah024091, Ah024096, Ah024100, Ah024103, Ah028031 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g106860 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51260, Sgl56564 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000034526, gene:ENSEOMG00000035380 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0013220 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30983 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG03.1865 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37240 |
| Zosteraceae | Zostera marina | 1 | Zosma01g36610.v3.1 |