Basic Information
Locus ID:
Ah027925
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 2242100 | 2260229 | + | Ah027925 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 152,574.50 Da | 59.72 | 41.53 | -1.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 13 | 85 | 7.66E-8 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 84 | 141 | 9.15E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 119 | 1.8E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 20 | 59 | 9.671455 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 37 | 46 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 810 | 839 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 731 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1349 | 1386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1387 | 1403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1349 | 1403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 763 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 437 | - | - |
| Coils | Coil | Coil | 213 | 233 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021715440.1 | mediator of RNA polymerase II transcription subunit 12-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803KRQ4 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16585 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6935 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027925 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g172920 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1653, Sbi_jg34898 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3095 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003279 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72842, Sgl76371 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004676, gene:ENSEOMG00000036551 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0003620, CQ.Regalona.r1.9BG0001980 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30062050 |
| Apiaceae | Apium graveolens | 2 | Ag8G00603, AgUnG00282 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G000890 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704084 |
| Asparagaceae | Asparagus officinalis | 5 | AsparagusV1_02.52.V1.1, AsparagusV1_02.53.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G27770 |
| Brassicaceae | Brassica nigra | 7 | BniB02g038520.2N, BniB02g038540.2N, BniB02g038560.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1962 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2039 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g18390 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g13230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1897 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016268 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb6G31551, Lb6G31552, Lb6G31553 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.3960, CH06.2312 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0040040, gene-QOZ80_1BG0090080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0460350.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_002861, gene-QYE76_014953 |
| Poaceae | Oryza coarctata | 2 | Oco23G002040, Oco24G001610 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g05920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G338100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703237 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G004560, Chr05G028790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G231600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG021640, gene_TRIDC5BG022210 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G127600.1, TraesCS5B02G126600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb159160_P001, Zm00001eb358910_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11391 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9006 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3227, evm.TU.LG16.374, evm.TU.LG19.922 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g40440 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.174 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24626 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15440 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19476 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.457 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018106 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5531 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11699 |
| Salicaceae | Populus euphratica | 3 | populus_peu02062, populus_peu02063, populus_peu35747 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631019 |
| Solanaceae | Solanum chilense | 1 | SOLCI004500200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107030925 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2974 |
| Tamaricaceae | Tamarix chinensis | 2 | TC11G0154, TC11G1130 |
| Zosteraceae | Zostera marina | 1 | Zosma01g40990.v3.1 |