Basic Information
Locus ID:
Ah027763
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 799542 | 816470 | + | Ah027763 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 129,952.01 Da | 42.68 | 76.95 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 55 | 170 | 8.10774E-33 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 188 | 516 | 5.59593E-168 | - |
| Pfam | PF00917 | MATH domain | 76 | 172 | 1.3E-11 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 877 | 1087 | 4.5E-58 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 190 | 511 | 1.1E-45 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 615 | 867 | 2.5E-76 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 185 | 542 | 1.24E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 51 | 179 | 1.49E-32 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 187 | 515 | 7.9E-90 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 793 | 890 | 4.3E-28 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 52 | 186 | 5.3E-43 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 675 | 792 | 2.9E-43 | - |
| SMART | SM00061 | math_3 | 55 | 151 | 1.2E-12 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 190 | 514 | 40.203407 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 53 | 170 | 23.817255 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 430 | 447 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 191 | 206 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 54 | - | - |
| Coils | Coil | Coil | 523 | 554 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021720606.1 | ubiquitin carboxyl-terminal hydrolase 12 [Chenopodium quinoa] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LXJ5 | ubiquitinyl hydrolase 1 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology