Basic Information
Locus ID:
Ah027748
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 649788 | 660446 | + | Ah027748 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 98,960.27 Da | 47.91 | 83.05 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 703 | 879 | 4.8686E-63 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 289 | 878 | 1.3E-81 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 287 | 881 | 2.55E-108 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 274 | 512 | 1.9E-67 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 568 | 884 | 2.6E-55 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 289 | 881 | 56.425728 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 290 | 305 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 824 | 841 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_021720584.1 | ubiquitin carboxyl-terminal hydrolase 8-like [Chenopodium quinoa] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803KRB6 | Ubiquitin carboxyl-terminal hydrolase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology