Basic Information
Locus ID:
Ah027734
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1313_HRSCAF_2064 | 487874 | 489133 | + | Ah027734 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 46,737.47 Da | 45.61 | 109.78 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 1 | 61 | 3.2E-14 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 63 | 2.12E-19 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 95 | 385 | 9.87E-10 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 64 | 406 | 1.6E-10 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 63 | 6.0E-20 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 1 | 57 | 3.3E-15 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 64 | 31.412848 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_021720566.1 | E3 ubiquitin-protein ligase PUB24-like [Chenopodium quinoa] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KR98 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology