Basic Information
Locus ID:
Ah027458
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Short Name:
CMT1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 96356486 | 96363043 | - | Ah027458 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 91,345.34 Da | 34.33 | 79.47 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 353 | 409 | 2.45388E-31 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 418 | 777 | 2.5E-34 | IPR001525 |
| Pfam | PF01426 | BAH domain | 95 | 194 | 1.8E-9 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 354 | 409 | 1.1E-9 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 340 | 410 | 8.89E-14 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 250 | 778 | 2.59E-72 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 27 | 187 | 1.7E-38 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 572 | 745 | 1.2E-239 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 253 | 796 | 1.2E-239 | - |
| SMART | SM00298 | chromo_7 | 353 | 412 | 6.2E-11 | IPR000953 |
| SMART | SM00439 | BAH_4 | 89 | 203 | 5.0E-11 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 422 | 775 | 7.1E-30 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 251 | 786 | 41.199741 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 354 | 407 | 12.376501 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 89 | 203 | 16.60051 | IPR001025 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 467 | 481 | 6.9E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 513 | 526 | 6.9E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 252 | 268 | 6.9E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 351 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_021752610.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KXW9 | Cytosine-specific methyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology