Basic Information
Locus ID:
Ah027417
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 95902916 | 95958662 | - | Ah027417 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 471,659.63 Da | 44.87 | 89.13 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2679 | 2763 | 3.59669E-4 | - |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2280 | 2423 | 6.9E-10 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2032 | 2199 | 8.1E-12 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3358 | 3506 | 6.5E-7 | IPR009543 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 158 | 402 | 9.2E-67 | IPR031646 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 6.8E-31 | IPR026854 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 625 | 862 | 1.6E-36 | IPR031642 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_021735028.1 | uncharacterized protein LOC110701710 isoform X2 [Chenopodium quinoa] | 0 |
| A1Z713 | Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KY05 | C2 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology