Basic Information
Locus ID:
Ah027031
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 92008700 | 92018103 | - | Ah027031 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 64,798.11 Da | 54.57 | 95.97 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 265 | 557 | 9.53284E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 349 | 387 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 557 | 4.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 299 | 1.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 514 | 0.068 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 311 | 345 | 0.044 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 557 | 2.66E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 257 | 522 | 3.0E-59 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 523 | 576 | 6.5E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 389 | 429 | 79.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 6.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 387 | 4.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 473 | 515 | 0.84 | IPR001680 |
| SMART | SM00668 | ctlh | 96 | 153 | 4.0E-5 | IPR006595 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 9.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 469 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 558 | 9.1E-10 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 63 | 95 | 8.975515 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 560 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 301 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 567 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 355 | 389 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 354 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 301 | 10.574686 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 350 | 10.390142 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 96 | 153 | 10.024656 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 374 | 388 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021713806.1 | uncharacterized WD repeat-containing protein C343.04c-like [Chenopodium quinoa] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KWW7 | WD repeat-containing protein 26 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology