Basic Information
Locus ID:
Ah026751
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 89024000 | 89035855 | + | Ah026751 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 94,481.89 Da | 54.88 | 68.87 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 445 | 710 | 5.9E-25 | IPR001394 |
| Pfam | PF01753 | MYND finger | 71 | 108 | 9.2E-9 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 68 | 110 | 2.09E-10 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 437 | 718 | 3.14E-61 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 56 | 113 | 2.8E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 375 | 726 | 2.2E-66 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 409 | 713 | 35.210823 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 71 | 108 | 11.844646 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 71 | 108 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 799 | 818 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 316 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021725392.1 | ubiquitin carboxyl-terminal hydrolase 17-like [Chenopodium quinoa] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KW81 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology