Basic Information
Locus ID:
Ah026615
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 87505289 | 87512547 | - | Ah026615 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 53,761.94 Da | 57.34 | 65.73 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 135 | 177 | 2.96547E-18 | - |
| Pfam | PF00412 | LIM domain | 135 | 173 | 2.4E-7 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 256 | 472 | 2.3E-105 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 127 | 160 | 1.12E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 130 | 204 | 8.6E-11 | - |
| SMART | SM00132 | lim_4 | 134 | 198 | 3.5E-7 | IPR001781 |
| SMART | SM00726 | uim | 83 | 102 | 27.0 | IPR003903 |
| SMART | SM00726 | uim | 45 | 64 | 1.9 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 133 | 206 | 10.6723 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 48 | 64 | 8.8387 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 135 | 169 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 78 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_021758072.1 | protein DA1-related 1-like [Chenopodium quinoa] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A803KW01 | LIM zinc-binding domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology