Basic Information
Locus ID:
Ah026116
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 80589491 | 80590984 | + | Ah026116 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 55,110.78 Da | 34.69 | 84.83 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 251 | 368 | 1.9E-9 | IPR013187 |
| Pfam | PF00646 | F-box domain | 28 | 66 | 8.5E-10 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 148 | 461 | 2.62E-5 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 28 | 78 | 7.46E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 77 | 6.9E-7 | - |
| SMART | SM00256 | fbox_2 | 30 | 70 | 2.5E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 135 | 332 | 1.4E-29 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 24 | 71 | 10.928167 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09190.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021772466.1 | putative F-box protein At3g10790 [Chenopodium quinoa] | 0 |
| Q9M0Q9 | Putative F-box protein At4g09190 OS=Arabidopsis thaliana OX=3702 GN=At4g09190 PE=4 SV=1 | 0 | |
| TrEMBL | A0A803L7D3 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026116 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g140770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12802, Sbi_jg53088 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8786 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026943 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl34072, Sgl34296, Sgl39698 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001075, gene:ENSEOMG00000003759 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0015700, CQ.Regalona.r1.6BG0016560 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G23433 |