Basic Information
Locus ID:
Ah026070
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 79378382 | 79386912 | - | Ah026070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 48,430.40 Da | 50.85 | 113.85 | 0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 28 | 417 | 7.56531E-46 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 175 | 371 | 1.6E-10 | IPR011701 |
| Pfam | PF07690 | Major Facilitator Superfamily | 71 | 170 | 1.7E-9 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 70 | 388 | 2.88E-29 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 28 | 418 | 3.7E-28 | IPR036259 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 99 | 123 | 5.6E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 355 | 378 | 5.6E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 295 | 316 | 5.6E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 68 | 87 | 5.6E-6 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021718248.1 | hippocampus abundant transcript-like protein 1 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803L7C1 | Hippocampus abundant transcript-like protein 1 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology