Basic Information
Locus ID:
Ah025848
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 75038115 | 75059889 | + | Ah025848 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 56,058.08 Da | 54.82 | 91.39 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 13 | 62 | 1.90628E-17 | - |
| Pfam | PF00627 | UBA/TS-N domain | 310 | 345 | 2.3E-10 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 484 | 517 | 1.2E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 413 | 459 | 8.4E-10 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 129 | 164 | 4.2E-7 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 13 | 65 | 2.3E-9 | IPR000626 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 410 | 465 | 2.22E-11 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 298 | 350 | 7.38E-8 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 122 | 168 | 2.2E-7 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 13 | 81 | 2.26E-12 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 466 | 523 | 1.29E-12 | IPR009060 |
| Gene3D | G3DSA:1.10.10.540 | - | 404 | 459 | 1.6E-11 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 474 | 521 | 1.2E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 120 | 167 | 3.4E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 12 | 67 | 1.2E-14 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 302 | 350 | 2.9E-14 | - |
| SMART | SM00165 | uba_6 | 307 | 347 | 0.0021 | IPR015940 |
| SMART | SM00165 | uba_6 | 126 | 166 | 0.31 | IPR015940 |
| SMART | SM00165 | uba_6 | 482 | 519 | 1.3E-5 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 124 | 167 | 10.161281 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 304 | 348 | 11.703495 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 480 | 520 | 12.860156 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 13 | 69 | 12.182546 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 430 | 452 | 6.6E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 476 | 492 | 6.6E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 493 | 507 | 6.6E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 508 | 523 | 6.6E-28 | IPR004806 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021754102.1 | ubiquitin receptor RAD23d-like isoform X4 [Chenopodium quinoa] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R6F2 | Ubiquitin receptor RAD23 OS=Spinacia oleracea OX=3562 GN=SOVF_101410 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology