HalophFGD

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Basic Information
Locus ID: Ah025748
Species & Taxonomic ID: Atriplex hortensis & 34272
Genome Assembly: Atriplex hortensis v2.0
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
Scaffold_1281_HRSCAF_1836 71352176 71357425 - Ah025748
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.45 56,562.46 Da 32.00 94.61 -0.06
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 96 126 3.3E-7 IPR001810
SUPERFAMILY SSF81383 F-box domain 94 128 1.57E-9 IPR036047
Gene3D G3DSA:1.20.1280.50 - 75 127 7.4E-6 -
SMART SM00256 fbox_2 95 135 2.7E-8 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_021719209.1 uncharacterized protein LOC110686903 [Chenopodium quinoa] 0
TrEMBL A0A803NDV6 F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Amaranthaceae Atriplex hortensis 4 Ah025728, Ah025731, Ah025734, Ah025748
Amaranthaceae Salicornia bigelovii 5 Sbi_jg59328, Sbi_jg59330, Sbi_jg59331, Sbi_jg59332 ...
Sbi_jg63295
Amaranthaceae Salicornia europaea 5 Seu_jg13336, Seu_jg23585, Seu_jg23587, Seu_jg23591 ...
Seu_jg23593
Amaranthaceae Suaeda glauca 1 Sgl66969
Amaranthaceae Chenopodium quinoa 3 CQ.Regalona.r1.5BG0019180, CQ.Regalona.r1.6AG0014140 ...
CQ.Regalona.r1.6AG0014150
Arecaceae Phoenix dactylifera 1 gene-LOC103709460
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.