Basic Information
Locus ID:
Ah025734
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 70892366 | 70893679 | + | Ah025734 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 50,541.53 Da | 33.79 | 88.74 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 43 | 8.9E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 320 | 3.01E-9 | IPR036047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 87 | 326 | 8.63E-5 | IPR011044 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 49 | 8.0E-7 | - |
| SMART | SM00256 | fbox_2 | 16 | 56 | 1.8E-6 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021719209.1 | uncharacterized protein LOC110686903 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MYN8 | TMV resistance protein N-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 4 | Ah025728, Ah025731, Ah025734, Ah025748 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg59328, Sbi_jg59330, Sbi_jg59331, Sbi_jg59332 ... |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg13336, Seu_jg23585, Seu_jg23587, Seu_jg23591 ... |
| Amaranthaceae | Suaeda glauca | 1 | Sgl66969 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5BG0019180, CQ.Regalona.r1.6AG0014140 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709460 |