Basic Information
Locus ID:
Ah025684
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 69276314 | 69293424 | + | Ah025684 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 139,459.34 Da | 51.38 | 78.70 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 52 | 178 | 1.4755E-30 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1126 | 1169 | 6.05925E-16 | - |
| CDD | cd12108 | Hr-like | 659 | 815 | 3.38223E-29 | - |
| CDD | cd12108 | Hr-like | 311 | 439 | 4.0033E-19 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 54 | 180 | 8.5E-12 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 655 | 816 | 2.1E-9 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 998 | 1073 | 5.8E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 309 | 441 | 1.3E-5 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1174 | 1231 | 3.4E-24 | IPR039512 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1064 | 1119 | 1.28E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 989 | 1054 | 4.71E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1126 | 1172 | 1.06E-7 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1198 | 1239 | 9.3E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1120 | 1171 | 5.2E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 48 | 198 | 4.8E-32 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 310 | 458 | 1.5E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 650 | 898 | 5.5E-26 | - |
| SMART | SM00184 | ring_2 | 1127 | 1168 | 8.0E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1063 | 1126 | 29.707417 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 991 | 1060 | 26.193579 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1127 | 1169 | 11.146755 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 581 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 581 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_021749708.1 | zinc finger protein BRUTUS-like [Chenopodium quinoa] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MYM5 | Zinc finger protein BRUTUS OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology