Basic Information
Locus ID:
Ah025222
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 53477702 | 53483179 | + | Ah025222 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 33,267.13 Da | 46.84 | 98.36 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 7 | 44 | 8.8E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 53 | 6.28E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 45 | 1.1E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 46 | 157 | 2.3E-6 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 47 | 11.564033 | IPR001810 |
| ProSitePatterns | PS00198 | 4Fe-4S ferredoxin-type iron-sulfur binding region signature. | 208 | 219 | - | IPR017900 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 253 | 273 | - | IPR013087 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01620.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_021727260.1 | F-box protein SKIP28-like [Chenopodium quinoa] | 0 |
| Q9ZU90 | F-box protein SKIP28 OS=Arabidopsis thaliana OX=3702 GN=SKIP28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LJL7 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology