Basic Information
Locus ID:
Ah025066
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 45646483 | 45663200 | - | Ah025066 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 183,776.27 Da | 43.87 | 73.33 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 942 | 981 | 7.46303E-17 | - |
| Pfam | PF00628 | PHD-finger | 942 | 984 | 3.7E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 864 | 913 | 2.8E-20 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 932 | 986 | 3.1E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 930 | 1006 | 5.3E-18 | IPR013083 |
| SMART | SM00384 | AT_hook_2 | 461 | 473 | 17.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 554 | 566 | 11.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 376 | 388 | 1.7 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 422 | 434 | 19.0 | IPR017956 |
| SMART | SM00249 | PHD_3 | 983 | 1043 | 5.7 | IPR001965 |
| SMART | SM00249 | PHD_3 | 941 | 982 | 1.2E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 939 | 984 | 9.881599 | IPR019787 |
| PRINTS | PR00929 | AT-hook-like domain signature | 376 | 386 | 9.4E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 420 | 431 | 9.4E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 459 | 469 | 9.4E-6 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1420 | 1475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 635 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 593 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1380 | 1407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 781 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1454 | 1475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 446 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05380.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_021714762.1 | uncharacterized protein LOC110682747 [Chenopodium quinoa] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M2E6 | PHD-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology