Basic Information
Locus ID:
Ah024787
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 35520355 | 35529920 | + | Ah024787 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 53,070.14 Da | 38.55 | 98.34 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 22 | 61 | 9.4E-10 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 217 | 432 | 3.1E-32 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 24 | 151 | 5.37E-26 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 218 | 433 | 5.88E-57 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 20 | 158 | 4.4E-41 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 211 | 241 | 6.4E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 242 | 452 | 2.8E-66 | - |
| SMART | SM00220 | serkin_6 | 176 | 432 | 5.7E-11 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 126 | 445 | 25.09281 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 287 | 299 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34210.1 | somatic embryogenesis receptor-like kinase 2. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. | 0 |
| RefSeq | XP_021714851.1 | somatic embryogenesis receptor kinase 2 [Chenopodium quinoa] | 0 |
| Q9XIC7 | Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=SERK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MSC2 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology