Basic Information
Locus ID:
Ah024570
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Cyclin-dependent kinase 5
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 28192317 | 28196042 | - | Ah024570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 16,396.85 Da | 36.96 | 109.46 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 31 | 116 | 7.1E-17 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 25 | 116 | 1.37E-18 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 28 | 48 | 4.9E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 49 | 116 | 4.9E-17 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 147 | 15.806772 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 86 | 98 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45490.2 | - | 0 |
| RefSeq | XP_048490279.1 | serine/threonine-protein kinase Aurora-3 [Beta vulgaris subsp. vulgaris] | 0 |
| O64629 | Serine/threonine-protein kinase Aurora-3 OS=Arabidopsis thaliana OX=3702 GN=AUR3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9E535 | Aurora kinase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5811 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah019980, Ah024570, Ah030830 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0000470 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G013550 |
| Poaceae | Zea mays | 2 | Zm00001eb158010_P001, Zm00001eb266030_P001 |