halophFGD

Basic Information

Locus ID: Ah024164

Species & Taxonomic ID: Atriplex hortensis & 34272

Genome Assembly: Atriplex hortensis v2.0

Description: F-box LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Scaffold_1281_HRSCAF_1836	17232102	17236232	+	Ah024164

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.16	74,577.49 Da	35.04	102.22	0.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF52047	RNI-like	47	255	1.41E-17	-
SUPERFAMILY	SSF52047	RNI-like	241	538	1.59E-31	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	468	555	3.2E-15	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	6	388	8.2E-40	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	390	467	1.0E-11	IPR032675
SMART	SM00367	LRR_CC_2	91	116	330.0	IPR006553
SMART	SM00367	LRR_CC_2	497	522	2.0	IPR006553
SMART	SM00367	LRR_CC_2	423	448	0.0077	IPR006553
SMART	SM00367	LRR_CC_2	192	217	1.3	IPR006553
SMART	SM00367	LRR_CC_2	218	243	25.0	IPR006553
SMART	SM00367	LRR_CC_2	65	89	480.0	IPR006553
SMART	SM00367	LRR_CC_2	320	345	51.0	IPR006553
SMART	SM00367	LRR_CC_2	294	319	220.0	IPR006553
SMART	SM00367	LRR_CC_2	346	371	180.0	IPR006553
SMART	SM00367	LRR_CC_2	449	474	690.0	IPR006553

KEGG Pathway

KO Term:

K03360 (F-box and leucine-rich repeat protein GRR1)

Pathway:

ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G80630.1	RNI-like superfamily protein.
RefSeq	XP_021718176.1	EIN3-binding F-box protein 1-like [Chenopodium quinoa]
TrEMBL	A0A803L761	F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	19	gene_21430, gene_21431, gene_21432, gene_21433, gene_21436 ... gene_21437, gene_21453, gene_21454, gene_21456, gene_21457, gene_21459, gene_21460, gene_26246, gene_26247, gene_26248, gene_26251, gene_26255, gene_26256, gene_26257
Amaranthaceae	Atriplex hortensis	6	Ah010442, Ah010443, Ah010444, Ah010447, Ah010794, Ah024164
Amaranthaceae	Beta vulgaris	3	BVRB_7g160670, BVRB_9g218820, BVRB_9g218830
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg24776, Sbi_jg8641
Amaranthaceae	Salicornia europaea	1	Seu_jg19963
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00005111
Amaranthaceae	Suaeda glauca	3	Sgl56011, Sgl60655, Sgl61204
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000015098, gene:ENSEOMG00000019679 ... gene:ENSEOMG00000035959, gene:ENSEOMG00000049759, gene:ENSEOMG00000052680, gene:ENSEOMG00000053013
Amaranthaceae	Chenopodium quinoa	16	CQ.Regalona.r1.1AG0013100, CQ.Regalona.r1.1BG0012960 ... CQ.Regalona.r1.7BG0009310, CQ.Regalona.r1.7BG0009320, CQ.Regalona.r1.7BG0009330, CQ.Regalona.r1.7BG0009340, CQ.Regalona.r1.7BG0009360, CQ.Regalona.r1.7BG0009670, CQ.Regalona.r1.7BG0011330, CQ.Regalona.r1.9AG0008630, CQ.Regalona.r1.9AG0009240, CQ.Regalona.r1.9AG0015160, CQ.Regalona.r1.9AG0015230, CQ.Regalona.r1.9AG0015240, CQ.Regalona.r1.9AG0015250, CQ.Regalona.r1.9BG0013090
Apiaceae	Apium graveolens	1	Ag4G00092
Asteraceae	Flaveria trinervia	1	Ftri1G24598
Brassicaceae	Arabidopsis thaliana	1	AT1G80630.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10018340m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g35130.v2.2
Brassicaceae	Brassica nigra	1	BniB06g068330.2N
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.792
Portulacaceae	Portulaca oleracea	4	evm.TU.LG08.980, evm.TU.LG08.981, evm.TU.LG22.91 ... evm.TU.LG22.92
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.57916.3, evm.TU.57917.3
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-6695
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-16976
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12271, nbisL1-mrna-12272
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-17128
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-20704
Salicaceae	Populus euphratica	1	populus_peu34905
Solanaceae	Lycium barbarum	4	gene-LOC132631481, gene-LOC132631483, gene-LOC132633051 ... gene-LOC132634305
Solanaceae	Solanum chilense	1	SOLCI003651800
Solanaceae	Solanum pennellii	1	gene-LOC107013683
Tamaricaceae	Reaumuria soongarica	2	STRG.19304_chr07_+, STRG.19306_chr07_-
Tamaricaceae	Tamarix chinensis	2	TC08G2295, TC08G2298