Basic Information
Locus ID:
Ah024121
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the SecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 16398146 | 16415792 | + | Ah024121 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 114,242.34 Da | 42.84 | 97.12 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17928 | DEXDc_SecA | 110 | 459 | 6.20129E-109 | - |
| CDD | cd18803 | SF2_C_secA | 465 | 742 | 1.27144E-58 | IPR044722 |
| Pfam | PF07517 | SecA DEAD-like domain | 86 | 446 | 4.2E-102 | IPR011115 |
| Pfam | PF07516 | SecA Wing and Scaffold domain | 772 | 949 | 1.0E-25 | IPR011116 |
| Pfam | PF01043 | SecA preprotein cross-linking domain | 299 | 403 | 1.1E-25 | IPR011130 |
| SUPERFAMILY | SSF81767 | Pre-protein crosslinking domain of SecA | 291 | 412 | 2.75E-36 | IPR036670 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 77 | 460 | 1.26E-60 | IPR027417 |
| SUPERFAMILY | SSF81886 | Helical scaffold and wing domains of SecA | 777 | 960 | 3.66E-27 | IPR036266 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 477 | 756 | 1.23E-43 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 90 | 460 | 2.7E-149 | IPR027417 |
| Gene3D | G3DSA:3.90.1440.10 | - | 293 | 413 | 2.7E-149 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 462 | 774 | 2.3E-72 | IPR027417 |
| Gene3D | G3DSA:1.10.3060.10 | Helical scaffold and wing domains of SecA | 807 | 950 | 7.3E-21 | - |
| SMART | SM00957 | SecA_DEAD_2 | 75 | 447 | 1.5E-202 | IPR011115 |
| SMART | SM00958 | SecA_PP_bind_2 | 292 | 403 | 2.5E-38 | IPR011130 |
| TIGRFAM | TIGR00963 | secA: preprotein translocase, SecA subunit | 96 | 812 | 1.7E-236 | IPR000185 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 157 | 291 | 11.961473 | IPR014001 |
| ProSiteProfiles | PS51196 | SecA family profile. | 71 | 774 | 121.806725 | IPR014018 |
| ProSitePatterns | PS01312 | SecA family signature. | 551 | 566 | - | IPR020937 |
| PRINTS | PR00906 | SecA protein signature | 421 | 438 | 6.3E-50 | IPR000185 |
| PRINTS | PR00906 | SecA protein signature | 384 | 406 | 6.3E-50 | IPR000185 |
| PRINTS | PR00906 | SecA protein signature | 458 | 471 | 6.3E-50 | IPR000185 |
| PRINTS | PR00906 | SecA protein signature | 169 | 183 | 6.3E-50 | IPR000185 |
| PRINTS | PR00906 | SecA protein signature | 131 | 155 | 6.3E-50 | IPR000185 |
| PRINTS | PR00906 | SecA protein signature | 185 | 195 | 6.3E-50 | IPR000185 |
| Hamap | MF_01382 | Protein translocase subunit SecA [secA]. | 63 | 952 | 16.642084 | IPR000185 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21650.2 | Preprotein translocase SecA family protein. Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality. | 0 |
| RefSeq | XP_021718195.1 | LOW QUALITY PROTEIN: protein translocase subunit SECA2, chloroplastic-like [Chenopodium quinoa] | 0 |
| D8WUA4 | Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SECA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L783 | chloroplast protein-transporting ATPase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10458, jg9019 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1077, gene_13408 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah024121, Ah031607 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g010050, BVRB_5g122730 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25704, Seu_jg7111 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004576, GOSA_00020180 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl11665, Sgl17164, Sgl54639, Sgl59975 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30007280, pistato.v30039110 |
| Apiaceae | Apium graveolens | 3 | Ag11G03939, Ag6G02443, Ag9G02368 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G000270, COCNU_15G003170 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701417, gene-LOC103720122 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G32559, Ftri18G11286 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G21650.3, AT4G01800.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g19170.v2.2, Sp6g01650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g009290.2N, BniB08g040660.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1867, Ceq06G0547 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G2007, Cgl06G0567 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g06910, gene.Cymno08g07140 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g16040, gene.Thate05g12950 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.547, evm.TU.LG06.839 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00016539, Pov_00021694 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G22942, Lb6G30841 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524 |
| Poaceae | Oryza coarctata | 3 | Oco01G009280, Oco02G009570, Oco22G003520 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g21820.1, LOC_Os11g08980.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G139800, gene-BS78_05G097000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103927, Pt_Chr0603665 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G338700, Tel4E01G158600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG028190, gene_TRIDC3BG032070 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G198400.1, TraesCS3B02G222700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb090990_P001, Zm00001eb130760_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27238, nbis-gene-6517 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10242, Zma_g18533 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g13940, gene.Posoc05g18660 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10616, nbisL1-mrna-18708 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-103, nbisL1-mrna-5559 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11369, nbisL1-mrna-13125 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.412, evm.TU.utg000006l.609 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00011737, Maker00013085 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10163, nbisL1-mrna-8110 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-7364, nbisL1-mrna-9803 |
| Salicaceae | Populus euphratica | 2 | populus_peu27429, populus_peu32459 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132627149, gene-LOC132644885 |
| Solanaceae | Solanum chilense | 2 | SOLCI001197400, SOLCI003112400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002391, gene-LOC107004481 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17557, gene_866 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2545, TC07G1717 |
| Zosteraceae | Zostera marina | 4 | Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ... |