Basic Information
Locus ID:
Ah023791
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 12405916 | 12407091 | - | Ah023791 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 43,428.09 Da | 45.46 | 76.01 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 183 | 226 | 3.41821E-18 | - |
| Pfam | PF13639 | Ring finger domain | 183 | 226 | 3.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 174 | 233 | 3.79E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 159 | 234 | 3.9E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 184 | 225 | 1.2E-7 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 180 | 233 | 0.0082 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 184 | 226 | 12.740079 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 282 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021743613.1 | RING-H2 finger protein ATL54-like [Chenopodium quinoa] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LUT7 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology