Basic Information
Locus ID:
Ah023744
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Phosphopantothenate-cysteine ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 11670017 | 11682632 | + | Ah023744 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 180,959.72 Da | 39.66 | 83.27 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12819 | Malectin-like domain | 969 | 1318 | 5.7E-27 | IPR024788 |
| Pfam | PF04127 | DNA / pantothenate metabolism flavoprotein | 56 | 260 | 1.4E-15 | IPR007085 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1425 | 1513 | 4.4E-16 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 757 | 847 | 7.1E-15 | IPR001245 |
| Pfam | PF12819 | Malectin-like domain | 303 | 647 | 1.4E-27 | IPR024788 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 722 | 842 | 7.72E-26 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1394 | 1510 | 5.9E-27 | IPR011009 |
| SUPERFAMILY | SSF102645 | CoaB-like | 45 | 296 | 9.16E-62 | IPR035929 |
| Gene3D | G3DSA:2.60.120.430 | - | 1149 | 1319 | 4.5E-16 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 480 | 650 | 7.0E-20 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 299 | 454 | 1.1E-19 | - |
| Gene3D | G3DSA:3.40.50.10300 | - | 34 | 298 | 6.6E-88 | IPR035929 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 825 | 930 | 2.4E-7 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 966 | 1118 | 1.5E-20 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1381 | 1494 | 4.4E-33 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 712 | 824 | 2.3E-32 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1419 | 1626 | 13.559466 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 752 | 1110 | 13.107179 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1425 | 1447 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02080.7 | - | 0 |
| RefSeq | XP_021743638.1 | LOW QUALITY PROTEIN: probable receptor-like protein kinase At2g23200 [Chenopodium quinoa] | 0 |
| Q9LZM3 | Phosphopantothenate--cysteine ligase 2 OS=Arabidopsis thaliana OX=3702 GN=PPCS2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LUW8 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22616 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16714 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023744 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g131200 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4159, Sbi_jg49643 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5609 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001013 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl10559 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000014154, gene:ENSEOMG00000034410 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0010910, CQ.Regalona.r1.1BG0014960 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30040410 |
| Apiaceae | Apium graveolens | 2 | Ag6G02463, Ag7G02345 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G014930, scaffold007667G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715234 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.140.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G10313 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G12350.1, AT5G02080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014147m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g40350.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g057910.2N, BniB05g031310.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1914 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2088 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g05050 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0398s00019.v1.0, Dusal.0398s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g06820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8368 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.990 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021143, Pov_00037336 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05570 |
| Poaceae | Echinochloa crus-galli | 11 | AH01.1010, AH02.1505, AH07.2322, AH08.467, BH02.1579 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0190610, gene-QOZ80_8AG0619200 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0745690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023158, gene-QYE76_032862 |
| Poaceae | Oryza coarctata | 3 | Oco03G013360, Oco04G012990, Oco15G003200 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g36550.1, LOC_Os08g07880.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G173200, gene-BS78_10G111200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204262, Pt_Chr0402411 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G009230, Chr15G010740, Chr20G011910, Chr29G010750 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G399900, Tel7E01G906700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6BG038040, gene_TRIDC7AG073080 |
| Poaceae | Triticum aestivum | 5 | TraesCS6B02G227200.1, TraesCS6D02G188000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb182920_P001, Zm00001eb414730_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18733, nbis-gene-18734, nbis-gene-38977 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16537, Zma_g22556 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1988, evm.TU.LG05.124, evm.TU.LG14.1172 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g14590 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.694 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9541 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14903 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18243 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.548 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2964 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20354 |
| Salicaceae | Populus euphratica | 2 | populus_peu14670, populus_peu32338 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603921, gene-LOC132627437 |
| Solanaceae | Solanum chilense | 1 | SOLCI005324700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107006035, gene-LOC107017006 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11432 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1413 |
| Zosteraceae | Zostera marina | 1 | Zosma03g33190.v3.1 |