Basic Information
Locus ID:
Ah023706
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 11263364 | 11273311 | - | Ah023706 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 121,404.71 Da | 50.55 | 72.07 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 553 | 857 | 5.51733E-129 | - |
| Pfam | PF01753 | MYND finger | 78 | 115 | 2.0E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 554 | 856 | 1.3E-45 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 74 | 118 | 7.5E-12 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 550 | 861 | 1.57E-83 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 70 | 121 | 2.6E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 547 | 868 | 8.0E-91 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 554 | 859 | 49.85955 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 78 | 115 | 11.44711 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 78 | 115 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 555 | 570 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 465 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 983 | 1008 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1031 | 1069 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 983 | 1104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 891 | 919 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1016 | 1030 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_021743660.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Chenopodium quinoa] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LUZ4 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology