Basic Information
Locus ID:
Ah023701
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 11197602 | 11198027 | + | Ah023701 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 14,818.41 Da | 36.19 | 48.65 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 16 | 54 | 6.42259E-17 | - |
| CDD | cd00325 | chitinase_GH19 | 77 | 141 | 1.27086E-23 | - |
| Pfam | PF00182 | Chitinase class I | 76 | 141 | 2.9E-30 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 17 | 54 | 6.8E-14 | IPR001002 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 72 | 141 | 1.8E-24 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 17 | 63 | 3.93E-14 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 57 | 141 | 3.6E-35 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 15 | 56 | 7.8E-18 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 17 | 54 | 1.6E-16 | IPR001002 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 15 | 56 | 10.751577 | IPR001002 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 27 | 46 | - | IPR018371 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 94 | 116 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 40 | 47 | 8.9E-7 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 33 | 40 | 8.9E-7 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 25 | 33 | 8.9E-7 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_021740343.1 | basic endochitinase-like [Chenopodium quinoa] | 0 |
| P08252 | Endochitinase A OS=Nicotiana tabacum OX=4097 GN=CHN48 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803MEI5 | Chitin-binding type-1 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology