Basic Information
Locus ID:
Ah023599
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 9883902 | 9884900 | + | Ah023599 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 39,578.85 Da | 45.67 | 77.20 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 277 | 308 | 2.9E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 227 | 312 | 2.5E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 228 | 319 | 1.7E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 238 | 307 | 3.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 238 | 308 | 10.291081 | IPR001841 |
| Coils | Coil | Coil | 100 | 127 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021768540.1 | E3 ubiquitin-protein ligase SIRP1-like [Chenopodium quinoa] | 0 |
| TrEMBL | M1DFZ1 | Zinc finger protein OS=Solanum tuberosum OX=4113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for Ah023599.