Basic Information
Locus ID:
Ah023585
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 9722375 | 9728221 | + | Ah023585 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 75,060.41 Da | 32.86 | 70.39 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 42 | 321 | 6.23976E-73 | - |
| CDD | cd10316 | RGL4_M | 361 | 460 | 3.67517E-33 | IPR029413 |
| CDD | cd10317 | RGL4_C | 472 | 658 | 3.20494E-54 | - |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 384 | 455 | 5.5E-24 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 37 | 230 | 2.5E-87 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 470 | 657 | 7.1E-54 | IPR029411 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 52 | 321 | 5.26E-9 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 467 | 658 | 8.25E-50 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 360 | 455 | 3.33E-8 | IPR013784 |
| Gene3D | G3DSA:2.60.120.260 | - | 468 | 658 | 9.8E-20 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 37 | 320 | 4.7E-11 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 358 | 457 | 7.8E-8 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_021759798.1 | rhamnogalacturonate lyase B-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LK80 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology