Basic Information
Locus ID:
Ah023533
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 8970978 | 8972346 | - | Ah023533 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.15 | 41,105.50 Da | 48.19 | 104.83 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 27 | 65 | 4.7E-7 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 164 | 335 | 1.02E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 25 | 266 | 5.1E-12 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 101 | 346 | 1.1E-12 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 68 | 1.5E-6 | - |
| SMART | SM00256 | fbox_2 | 31 | 71 | 0.001 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 25 | 73 | 8.808615 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14096.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_021759618.1 | putative FBD-associated F-box protein At1g55030 [Chenopodium quinoa] | 0 |
| Q94B46 | F-box/LRR-repeat protein At4g14096 OS=Arabidopsis thaliana OX=3702 GN=At4g14096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LKE0 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah023533 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg51947 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg6824, Seu_jg9920 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11645, Sgl17142 |