halophFGD

Basic Information

Locus ID: Ah023472

Species & Taxonomic ID: Atriplex hortensis & 34272

Genome Assembly: Atriplex hortensis v2.0

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Scaffold_1281_HRSCAF_1836	8389276	8411070	-	Ah023472

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.67	212,826.98 Da	40.08	79.63	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09612	Jacalin	1304	1434	1.86884E-42	IPR033734
CDD	cd20251	Complex1_LYR_SF	16	73	7.15885E-19	-
CDD	cd09612	Jacalin	298	426	7.29781E-37	IPR033734
CDD	cd09612	Jacalin	1544	1673	2.47531E-38	IPR033734
CDD	cd09612	Jacalin	126	258	1.57136E-46	IPR033734
CDD	cd09612	Jacalin	1775	1903	3.20023E-39	IPR033734
Pfam	PF01535	PPR repeat	1159	1188	0.0012	IPR002885
Pfam	PF01419	Jacalin-like lectin domain	1544	1673	1.5E-26	IPR001229
Pfam	PF01419	Jacalin-like lectin domain	1772	1903	1.0E-31	IPR001229
Pfam	PF13041	PPR repeat family	1055	1102	2.1E-10	IPR002885
Pfam	PF14432	DYW family of nucleic acid deaminases	1233	1296	9.4E-9	IPR032867
Pfam	PF13041	PPR repeat family	984	1023	6.7E-9	IPR002885
Pfam	PF01419	Jacalin-like lectin domain	1304	1435	6.7E-32	IPR001229
Pfam	PF01535	PPR repeat	715	745	3.5E-5	IPR002885
Pfam	PF01535	PPR repeat	1131	1157	0.068	IPR002885
Pfam	PF01419	Jacalin-like lectin domain	548	617	7.3E-12	IPR001229
Pfam	PF01419	Jacalin-like lectin domain	298	426	1.2E-25	IPR001229
Pfam	PF13041	PPR repeat family	883	930	7.1E-10	IPR002885
Pfam	PF13041	PPR repeat family	814	860	4.5E-12	IPR002885
Pfam	PF01535	PPR repeat	689	713	0.0044	IPR002885
Pfam	PF01419	Jacalin-like lectin domain	126	258	1.0E-33	IPR001229
Pfam	PF05347	Complex 1 protein (LYR family)	16	67	5.1E-10	IPR008011
SUPERFAMILY	SSF51101	Mannose-binding lectins	115	257	1.44E-40	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	1533	1672	1.03E-35	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	288	426	4.06E-34	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	1294	1435	1.83E-41	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	539	620	5.36E-19	IPR036404
SUPERFAMILY	SSF51101	Mannose-binding lectins	1761	1902	4.71E-42	IPR036404
Gene3D	G3DSA:2.100.10.30	-	1281	1433	2.8E-53	IPR036404
Gene3D	G3DSA:2.100.10.30	-	103	258	4.9E-50	IPR036404
Gene3D	G3DSA:2.100.10.30	-	536	631	4.6E-24	IPR036404
Gene3D	G3DSA:2.100.10.30	-	1525	1673	1.6E-44	IPR036404
Gene3D	G3DSA:2.100.10.30	-	1750	1903	9.7E-54	IPR036404
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	1049	1117	9.7E-10	IPR011990
Gene3D	G3DSA:2.100.10.30	-	282	426	3.6E-43	IPR036404
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	891	1048	4.1E-41	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	1118	1209	5.8E-12	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	676	765	1.3E-17	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	766	877	3.6E-24	IPR011990
SMART	SM00915	Jacalin_2	126	259	5.5E-38	IPR001229
SMART	SM00915	Jacalin_2	548	662	3.4E-8	IPR001229
SMART	SM00915	Jacalin_2	1304	1435	2.1E-41	IPR001229
SMART	SM00915	Jacalin_2	298	428	1.1E-33	IPR001229
SMART	SM00915	Jacalin_2	1544	1674	2.3E-33	IPR001229
SMART	SM00915	Jacalin_2	1772	1904	4.7E-45	IPR001229
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	1059	1091	3.6E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	987	1021	3.6E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	886	919	2.6E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	1022	1056	8.4E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	851	885	4.0E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	816	849	5.5E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	715	748	2.6E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	1159	1192	1.3E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	688	714	0.002	IPR002885
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	1293	1435	50.589344	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	115	259	49.445084	IPR001229
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	884	918	12.430172	IPR002885
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	537	617	16.608505	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	287	428	44.324039	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	1761	1904	51.658573	IPR001229
ProSiteProfiles	PS51752	Jacalin-type lectin domain profile.	1533	1674	44.464725	IPR001229
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	1020	1054	12.101333	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	814	848	13.339959	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	985	1019	12.342482	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	849	883	10.753093	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	713	747	11.465577	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	1157	1191	10.05157	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	1056	1090	13.460534	IPR002885

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0008270 (zinc ion binding) GO:0030246 (carbohydrate binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G19715.1	Mannose-binding lectin superfamily protein.
RefSeq	XP_021759624.1	uncharacterized protein LOC110724509 [Chenopodium quinoa]
Swiss-Prot	F4HQX1	Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1
TrEMBL	A0A803MSI1	Complex 1 LYR protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10582, jg13569, jg22875, jg27248
Aizoaceae	Mesembryanthemum crystallinum	2	gene_23077, gene_23079
Amaranthaceae	Atriplex hortensis	2	Ah011355, Ah023472
Amaranthaceae	Beta vulgaris	4	BVRB_1g006640, BVRB_1g006650, BVRB_1g006670, BVRB_9g211560
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg28803, Sbi_jg3146, Sbi_jg3153, Sbi_jg39146
Amaranthaceae	Salicornia europaea	2	Seu_jg11011, Seu_jg6762
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000023, GOSA_00009615, GOSA_00014151
Amaranthaceae	Suaeda glauca	9	Sgl11510, Sgl11514, Sgl11516, Sgl11596, Sgl11600, Sgl16965 ... Sgl16968, Sgl17093, Sgl17097
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000013345, gene:ENSEOMG00000013653 ... gene:ENSEOMG00000015107, gene:ENSEOMG00000033716, gene:ENSEOMG00000035061, gene:ENSEOMG00000039654, gene:ENSEOMG00000047367, gene:ENSEOMG00000049597, gene:ENSEOMG00000052705
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0008880, CQ.Regalona.r1.1BG0016950 ... CQ.Regalona.r1.1BG0016970, CQ.Regalona.r1.7AG0015310, CQ.Regalona.r1.9BG0011020
Anacardiaceae	Pistacia vera	1	pistato.v30116130
Apiaceae	Apium graveolens	4	Ag1G00379, Ag2G02820, Ag4G02274, Ag6G01416
Arecaceae	Cocos nucifera	2	COCNU_06G013050, COCNU_06G013120
Arecaceae	Phoenix dactylifera	2	gene-LOC103717797, gene-LOC103719297
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.2115.V1.1, AsparagusV1_05.2895.V1.1 ... AsparagusV1_08.2928.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G02662, Ftri10G07324, Ftri10G25229, Ftri10G27720 ... Ftri10G32015, Ftri18G05095
Brassicaceae	Arabidopsis thaliana	2	AT1G19715.3, AT1G73040.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10007145m.g.v1.0, Thhalv10019210m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g17550.v2.2, Sp5g28000.v2.2
Brassicaceae	Brassica nigra	3	BniB03g008330.2N, BniB04g034420.2N, BniB05g070250.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0901, Ceq03G0975
Casuarinaceae	Casuarina glauca	2	Cgl02G0914, Cgl03G1061
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno10g09320, gene.Cymno16g03180
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g03190, gene.Thate01g03210, gene.Thate09g07520
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1340
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.13, evm.TU.LG06.628
Plantaginaceae	Plantago ovata	1	Pov_00015244
Plumbaginaceae	Limonium bicolor	12	Lb0G36806, Lb0G37360, Lb0G38063, Lb0G38278, Lb0G38317 ... Lb1G00549, Lb1G00551, Lb1G00554, Lb1G02726, Lb2G09419, Lb7G34303, Lb8G35786
Poaceae	Echinochloa crus-galli	9	AH02.3457, AH05.1812, AH08.2131, BH02.3499, BH05.1978 ... CH02.3041, CH02.3531, CH05.2044, CH08.2422
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0035380, gene-QOZ80_1BG0080450 ... gene-QOZ80_1BG0085430, gene-QOZ80_5AG0364930, gene-QOZ80_5AG0367290, gene-QOZ80_5BG0412790, gene-QOZ80_5BG0415010
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0076420.1, HORVU.MOREX.r3.1HG0080180.1 ... HORVU.MOREX.r3.3HG0223290.1, HORVU.MOREX.r3.3HG0292920.1, HORVU.MOREX.r3.7HG0682630.1
Poaceae	Lolium multiflorum	14	gene-QYE76_000100, gene-QYE76_014812, gene-QYE76_016264 ... gene-QYE76_017484, gene-QYE76_024985, gene-QYE76_030195, gene-QYE76_048484, gene-QYE76_048486, gene-QYE76_049155, gene-QYE76_049156, gene-QYE76_049165, gene-QYE76_049168, gene-QYE76_049169, gene-QYE76_049171
Poaceae	Oryza coarctata	7	Oco02G018700, Oco02G022290, Oco09G013680, Oco09G015600 ... Oco10G013760, Oco10G015470, Oco15G010450
Poaceae	Oryza sativa	2	LOC_Os01g51050.1, LOC_Os05g43240.1
Poaceae	Paspalum vaginatum	5	gene-BS78_03G250500, gene-BS78_03G294300, gene-BS78_K113200 ... gene-BS78_09G195900, gene-BS78_09G219000
Poaceae	Puccinellia tenuiflora	12	Pt_Chr0205493, Pt_Chr0205497, Pt_Chr0206968, Pt_Chr0206969 ... Pt_Chr0403695, Pt_Chr0503873, Pt_Chr0503896, Pt_Chr0504260, Pt_Chr0504311, Pt_Chr0601571, Pt_Chr0601601, Pt_Chr0700174
Poaceae	Sporobolus alterniflorus	11	Chr01G014880, Chr02G008190, Chr02G011660, Chr05G025350 ... Chr12G022010, Chr18G013400, Chr18G015100, Chr20G001510, Chr22G002450, Chr22G004290, Chr29G001880
Poaceae	Thinopyrum elongatum	4	Tel1E01G530900, Tel1E01G591000, Tel3E01G506800 ... Tel7E01G451800
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG048350, gene_TRIDC1BG054910 ... gene_TRIDC1BG061170, gene_TRIDC3AG045650, gene_TRIDC3BG023590, gene_TRIDC3BG051780
Poaceae	Triticum aestivum	23	TraesCS1A02G325500.1, TraesCS1A02G363600.1 ... TraesCS1B02G338600.1, TraesCS1B02G380700.1, TraesCS1D02G327100.1, TraesCS1D02G367900.1, TraesCS1D02G368600.1, TraesCS3A02G131600.1, TraesCS3A02G321000.1, TraesCS3B02G031800.1, TraesCS3B02G032600.1, TraesCS3B02G052500.1, TraesCS3B02G053100.1, TraesCS3B02G165200.1, TraesCS3B02G344800.1, TraesCS3D02G028700.1, TraesCS3D02G029200.1, TraesCS3D02G310300.1, TraesCS6A02G105700.1, TraesCS6B02G135000.1, TraesCS7A02G256100.1, TraesCS7B02G152700.1, TraesCS7D02G254500.1
Poaceae	Zea mays	4	Zm00001eb292320_P001, Zm00001eb342390_P002 ... Zm00001eb362900_P001, Zm00001eb369990_P001
Poaceae	Zoysia japonica	5	nbis-gene-11766, nbis-gene-11767, nbis-gene-12697 ... nbis-gene-14375, nbis-gene-24999
Poaceae	Zoysia macrostachya	5	Zma_g24404, Zma_g26906, Zma_g28703, Zma_g8504, Zma_g8764
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.1672, evm.TU.LG10.1158, evm.TU.LG19.563 ... evm.TU.LG24.25
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g11420, gene.Posoc04g19300, gene.Posoc09g05680
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_8_RagTag.1285, evm.TU.Scaffold_8_RagTag.1286
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-9058, nbisL1-mrna-9061, nbisL1-mrna-9062
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-19028
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-15363
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000018l.421
Rhizophoraceae	Kandelia obovata	1	Maker00002978
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-13340, nbisL1-mrna-13341
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-11138, nbisL1-mrna-11139
Salicaceae	Populus euphratica	6	populus_peu15272, populus_peu15273, populus_peu23891 ... populus_peu23895, populus_peu30628, populus_peu32931
Solanaceae	Lycium barbarum	5	gene-LOC132611111, gene-LOC132620346, gene-LOC132623605 ... gene-LOC132629141, gene-LOC132633440
Solanaceae	Solanum chilense	4	SOLCI001343200, SOLCI001343300, SOLCI001819000 ... SOLCI003839100
Solanaceae	Solanum pennellii	4	gene-LOC107002166, gene-LOC107014445, gene-LOC107016210 ... gene-LOC107017061
Tamaricaceae	Reaumuria soongarica	9	STRG.18917_chr07_-, STRG.18921_chr07_-, STRG.18923_chr07_- ... gene_10845, gene_10846, gene_155, gene_1697, gene_4839, gene_6767
Tamaricaceae	Tamarix chinensis	5	TC04G1639, TC08G1814, TC08G1816, TC08G1817, TC08G1820
Zosteraceae	Zostera marina	1	Zosma05g12300.v3.1