Basic Information
Locus ID:
Ah023382
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Sec12-like protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 7680759 | 7685084 | - | Ah023382 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 42,712.85 Da | 29.82 | 86.33 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 154 | 233 | 3.5E-5 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 71 | 349 | 5.1E-34 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 40 | 357 | 6.0E-67 | IPR015943 |
| SMART | SM00320 | WD40_4 | 182 | 217 | 5.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 308 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 312 | 351 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 137 | 175 | 0.0068 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 47 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_021755153.1 | SEC12-like protein 2 [Chenopodium quinoa] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A803M4G0 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology