Basic Information
Locus ID:
Ah023370
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 7558411 | 7566059 | + | Ah023370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 163,012.70 Da | 36.35 | 105.26 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 607 | 807 | 2.42844E-106 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1241 | 1430 | 5.36628E-110 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 293 | 581 | 1.46993E-99 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 914 | 1208 | 7.33506E-90 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 1239 | 1377 | 2.2E-26 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 625 | 759 | 5.1E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 295 | 559 | 1.0E-27 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 926 | 1160 | 7.1E-32 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1237 | 1442 | 9.77E-60 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 913 | 1215 | 2.35E-48 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 287 | 589 | 2.88E-35 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 602 | 823 | 3.02E-56 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 877 | 1214 | 1.3E-54 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 260 | 590 | 4.9E-52 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 602 | 833 | 1.9E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1216 | 1448 | 8.2E-71 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1238 | 1430 | 3.0E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 634 | 807 | 1.2E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 607 | 830 | 21.502047 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1205 | 1446 | 15.366291 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 295 | 573 | 34.997169 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 916 | 1196 | 32.704079 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 732 | 746 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 845 | 889 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 845 | 861 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 862 | 889 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021756470.1 | putative ABC transporter C family member 15 [Chenopodium quinoa] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LIL0 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology