Basic Information
Locus ID:
Ah023203
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
domain in FBox and BRCT domain containing plant proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 5910263 | 5916511 | + | Ah023203 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 58,390.98 Da | 40.59 | 98.26 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 45 | 79 | 2.7E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 42 | 82 | 1.96E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 154 | 401 | 8.63E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 96 | 432 | 4.9E-7 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 28 | 81 | 2.2E-7 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 42 | 79 | 10.663223 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021734883.1 | uncharacterized protein LOC110701556 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A484NH86 | F-box domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS42085 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 7 | Ah023203, Ah023944, Ah028596, Ah028601, Ah028833, Ah035632 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019563 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000009927, gene:ENSEOMG00000016680 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0017870 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18895 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132613385, gene-LOC132622071, gene-LOC132636488 |