Basic Information
Locus ID:
Ah023157
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 5542963 | 5544213 | - | Ah023157 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 42,588.47 Da | 55.57 | 93.34 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 34 | 108 | 1.0E-5 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 192 | 321 | 2.0E-18 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 181 | 321 | 8.37E-23 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 28 | 172 | 2.09E-17 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 170 | 321 | 2.0E-15 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 21 | 168 | 1.7E-11 | IPR036378 |
| SMART | SM00554 | fasc_3 | 218 | 322 | 6.8E-16 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 22 | 169 | 11.369278 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 180 | 319 | 17.566723 | IPR000782 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 20 | 5.0 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 351 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60900.1 | FASCICLIN-like arabinogalactan-protein 10. | 0 |
| RefSeq | XP_021748067.1 | fasciclin-like arabinogalactan protein 10 [Chenopodium quinoa] | 0 |
| Q9LZX4 | Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S236 | Fasciclin-like arabinogalactan protein 8 OS=Spinacia oleracea OX=3562 GN=SOVF_003130 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology