Basic Information
Locus ID:
Ah022744
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Regulator of chromosome condensation (RCC1) repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 1798553 | 1800853 | + | Ah022744 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 62,885.03 Da | 46.39 | 86.17 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13540 | Regulator of chromosome condensation (RCC1) repeat | 230 | 255 | 6.4E-5 | - |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 111 | 300 | 2.49E-12 | IPR009091 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 439 | 515 | 4.41E-9 | IPR011009 |
| Gene3D | G3DSA:2.130.10.30 | - | 101 | 305 | 1.1E-8 | IPR009091 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 434 | 522 | 3.8E-14 | - |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 466 | 488 | - | IPR017441 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47850.1 | CRINKLY4 related 4. | 0 |
| RefSeq | XP_021760401.1 | serine/threonine-protein kinase-like protein CCR4 [Chenopodium quinoa] | 0 |
| Q9FIJ6 | Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana OX=3702 GN=CCR4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M511 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology