Basic Information
Locus ID:
Ah022662
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 1093549 | 1098203 | - | Ah022662 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 137,957.64 Da | 36.82 | 108.52 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 416 | 589 | 8.00717E-81 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 102 | 392 | 5.07933E-82 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 687 | 981 | 2.21528E-85 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1004 | 1224 | 2.8789E-102 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 689 | 930 | 2.7E-34 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 101 | 369 | 2.9E-17 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1023 | 1171 | 1.2E-29 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 434 | 498 | 4.8E-9 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 674 | 977 | 6.67E-50 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 409 | 606 | 5.62E-39 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 90 | 399 | 2.88E-24 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1000 | 1239 | 4.72E-65 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 650 | 987 | 8.4E-60 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 538 | 624 | 1.1E-16 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 989 | 1242 | 9.7E-78 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 401 | 537 | 5.7E-34 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 73 | 400 | 2.2E-40 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1032 | 1225 | 1.4E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 443 | 589 | 0.014 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 409 | 612 | 14.052439 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 689 | 969 | 36.016319 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 101 | 384 | 25.731647 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1008 | 1240 | 18.867674 | IPR003439 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 661 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 635 | 649 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021859153.1 | ABC transporter C family member 3-like isoform X1 [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology