Basic Information
Locus ID:
Ah022651
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Leucine-rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 941134 | 967639 | - | Ah022651 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 390,961.63 Da | 34.21 | 101.44 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 1295 | 1321 | 6.9E-5 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 2638 | 2674 | 7.0E-6 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 2360 | 2378 | 3.2E-5 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 750 | 767 | 0.015 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 424 | 440 | 4.6E-4 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 3039 | 3061 | 0.034 | IPR001611 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 1986 | 2069 | 1.6E-8 | - |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 1931 | 1977 | 2.7E-13 | IPR029472 |
| Pfam | PF00560 | Leucine Rich Repeat | 1687 | 1708 | 0.28 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 2506 | 2528 | 0.99 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 13 | 34 | 0.001 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 3308 | 3553 | 1.1E-19 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 2803 | 2862 | 3.0E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 3112 | 3169 | 6.5E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 215 | 273 | 1.4E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 141 | 201 | 1.2E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 1759 | 1816 | 4.5E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 1426 | 1485 | 1.6E-8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 3292 | 3554 | 3.27E-37 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 1543 | 1826 | 2.51E-49 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 424 | 693 | 6.63E-40 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 2941 | 3177 | 9.52E-50 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 20 | 286 | 3.4E-43 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 2364 | 2526 | 3.95E-19 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 1309 | 1583 | 1.87E-48 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 951 | 1244 | 1.73E-46 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 732 | 1030 | 1.02E-43 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 2659 | 2936 | 1.13E-45 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2339 | 2550 | 1.3E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 888 | 989 | 1.4E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1441 | 1541 | 1.6E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1286 | 1440 | 7.3E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2896 | 3206 | 1.7E-74 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 462 | 704 | 2.5E-52 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2638 | 2793 | 6.7E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2794 | 2895 | 5.1E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 3 | 304 | 3.2E-65 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 3258 | 3361 | 1.3E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 405 | 461 | 1.2E-5 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 3363 | 3558 | 2.9E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1542 | 1845 | 8.7E-78 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 990 | 1270 | 6.7E-74 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 736 | 887 | 1.5E-25 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 1155 | 1179 | 40.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 657 | 680 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 795 | 818 | 1.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 542 | 562 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1612 | 1636 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 493 | 520 | 410.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 610 | 634 | 61.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 2702 | 2725 | 10.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 2965 | 2989 | 56.0 | IPR003591 |
| SMART | SM00364 | LRR_bac_2 | 213 | 233 | 65.0 | - |
| SMART | SM00364 | LRR_bac_2 | 542 | 561 | 210.0 | - |
| SMART | SM00364 | LRR_bac_2 | 2849 | 2869 | 200.0 | - |
| SMART | SM00364 | LRR_bac_2 | 237 | 257 | 560.0 | - |
| SMART | SM00364 | LRR_bac_2 | 2702 | 2722 | 140.0 | - |
| SMART | SM00364 | LRR_bac_2 | 466 | 485 | 440.0 | - |
| SMART | SM00369 | LRR_typ_2 | 1107 | 1131 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 466 | 489 | 28.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 1400 | 1423 | 260.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 518 | 544 | 130.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 2825 | 2851 | 500.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 2458 | 2489 | 300.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 795 | 816 | 760.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1131 | 1157 | 450.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 870 | 891 | 90.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 3037 | 3063 | 100.0 | - |
| SMART | SM00369 | LRR_typ_2 | 164 | 188 | 400.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 3132 | 3155 | 6.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 3156 | 3178 | 45.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 1708 | 1734 | 57.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 94 | 116 | 200.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 2702 | 2725 | 390.0 | - |
| SMART | SM00364 | LRR_bac_2 | 1349 | 1369 | 140.0 | - |
| SMART | SM00364 | LRR_bac_2 | 1200 | 1220 | 120.0 | - |
| SMART | SM00369 | LRR_typ_2 | 1424 | 1447 | 36.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1708 | 1732 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1059 | 1083 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1349 | 1372 | 10.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 1349 | 1372 | 390.0 | - |
| SMART | SM00369 | LRR_typ_2 | 942 | 965 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 3061 | 3085 | 61.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 3013 | 3037 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 2849 | 2872 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1660 | 1684 | 340.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 2406 | 2428 | 50.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 118 | 142 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 237 | 261 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 2458 | 2482 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1779 | 1802 | 9.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 2504 | 2527 | 59.0 | IPR003591 |
| SMART | SM00364 | LRR_bac_2 | 2406 | 2425 | 27.0 | - |
| SMART | SM00364 | LRR_bac_2 | 1803 | 1823 | 470.0 | - |
| SMART | SM00364 | LRR_bac_2 | 1424 | 1444 | 590.0 | - |
| SMART | SM00364 | LRR_bac_2 | 1496 | 1516 | 200.0 | - |
| SMART | SM00364 | LRR_bac_2 | 795 | 815 | 180.0 | - |
| SMART | SM00364 | LRR_bac_2 | 3132 | 3152 | 170.0 | - |
| SMART | SM00364 | LRR_bac_2 | 3156 | 3176 | 430.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 657 | 678 | 320.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1472 | 1498 | 500.0 | - |
| SMART | SM00369 | LRR_typ_2 | 1566 | 1589 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 870 | 894 | 90.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 140 | 169 | 350.0 | - |
| SMART | SM00369 | LRR_typ_2 | 1496 | 1519 | 5.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 2919 | 2942 | 210.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 468 | 489 | 7.450131 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 544 | 565 | 7.588744 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 2704 | 2725 | 7.473233 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 2896 | 2918 | 7.018892 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1351 | 1372 | 7.473233 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1543 | 1565 | 7.018892 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 797 | 818 | 7.33462 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 3282 | 3558 | 19.495745 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 96 | 118 | 7.196008 | IPR001611 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34420.1 | leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_021748806.1 | LRR receptor-like serine/threonine-protein kinase GSO2 [Chenopodium quinoa] | 0 |
| O22938 | Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 OS=Arabidopsis thaliana OX=3702 GN=PXC3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L047 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg12176, jg12184, jg6496, jg6497, jg6499 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1539 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022651 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g000900, BVRB_1g000910 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000777 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10676, Sgl16007 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000014842, gene:ENSEOMG00000033386 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0000890, CQ.Regalona.r1.2BG0028100 |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30036320, pistato.v30036330, pistato.v30036350 ... |
| Apiaceae | Apium graveolens | 1 | Ag7G02334 |
| Arecaceae | Cocos nucifera | 4 | COCNU_02G011260, COCNU_02G011270, COCNU_15G003240 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701420, gene-LOC103707547, gene-LOC120113031 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.652.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G21224 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G34420.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006707m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g29610.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g015210.2N, BniB07g015330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1555 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1690, Cgl03G1691 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG06.1437, evm.TU.LG06.1443, evm.TU.LG06.1445 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021811 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12217 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.358, BH05.416, CH05.474, CH05.729 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0383840, gene-QOZ80_5BG0430670 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0346810.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_002589 |
| Poaceae | Oryza coarctata | 3 | Oco22G003560, Oco22G003570, Oco23G003130 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g09110.1, LOC_Os11g09130.1, LOC_Os12g08180.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G052300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104098, Pt_Chr0703351 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G016750, Chr04G023480, Chr06G025290, Chr19G013010 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G218100, Tel5E01G666800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG034170, gene_TRIDC4BG015650 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS4B02G101100.1.cds1, TraesCS4D02G097700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb408490_P001, Zm00001eb408500_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-25504, nbis-gene-25506, nbis-gene-51111 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17683, Zma_g24840 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.1992, evm.TU.LG06.341, evm.TU.LG19.1443 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g18610 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1302 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18459, nbisL1-mrna-18511 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13472 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13276 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.308 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012031 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8990 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18511 |
| Salicaceae | Populus euphratica | 2 | populus_peu16647, populus_peu18940 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627123 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002869 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1302 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2340 |