Basic Information
Locus ID:
Ah022649
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_1281_HRSCAF_1836 | 908155 | 926615 | - | Ah022649 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 164,295.03 Da | 39.11 | 105.82 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 917 | 1210 | 1.87427E-83 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 298 | 587 | 3.00486E-72 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1233 | 1453 | 2.78593E-104 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 615 | 815 | 7.59474E-108 | - |
| Pfam | PF00005 | ABC transporter | 633 | 767 | 2.1E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1252 | 1400 | 2.5E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 299 | 566 | 1.8E-16 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 919 | 1159 | 1.6E-32 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1228 | 1460 | 2.05E-66 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 613 | 835 | 1.1E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 285 | 587 | 7.85E-24 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 904 | 1206 | 3.53E-48 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 268 | 594 | 1.5E-34 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 879 | 1216 | 4.5E-57 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1218 | 1471 | 4.3E-81 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 595 | 852 | 1.1E-75 | IPR027417 |
| SMART | SM00382 | AAA_5 | 642 | 815 | 9.7E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1261 | 1446 | 6.9E-15 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 919 | 1198 | 34.211891 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 295 | 579 | 25.24679 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1237 | 1469 | 18.787642 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 617 | 838 | 22.869253 | IPR003439 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 864 | 878 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 857 | 891 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021736749.1 | ABC transporter C family member 3-like [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology