Basic Information
Locus ID:
Ah022545
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 98514128 | 98521140 | - | Ah022545 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 53,017.47 Da | 56.73 | 66.18 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 22 | 107 | 3.42125E-38 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 250 | 314 | 1.41631E-21 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 23 | 107 | 4.1E-18 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 250 | 317 | 2.4E-16 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 243 | 322 | 2.36E-22 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 18 | 115 | 9.03E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 232 | 328 | 4.3E-22 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 13 | 121 | 5.9E-26 | IPR036431 |
| SMART | SM00501 | bright_3 | 21 | 112 | 3.0E-25 | IPR001606 |
| SMART | SM01014 | ARID_2 | 17 | 107 | 1.0E-26 | - |
| SMART | SM00398 | hmgende2 | 249 | 318 | 2.1E-20 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 20 | 111 | 25.588108 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 250 | 317 | 15.510401 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 476 | - | - |
| Coils | Coil | Coil | 299 | 319 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021745860.1 | high mobility group B protein 15-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LZC3 | High mobility group B protein 15-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology