halophFGD

Basic Information

Locus ID: Ah022482

Species & Taxonomic ID: Atriplex hortensis & 34272

Genome Assembly: Atriplex hortensis v2.0

Description: F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Scaffold_390_HRSCAF_510	97984720	97985952	-	Ah022482

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.54	47,375.57 Da	34.98	82.17	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	33	99	2.09E-8	IPR036047
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	136	345	5.8E-18	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G12870.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_021748992.1	putative F-box protein At1g32420 [Chenopodium quinoa]
Swiss-Prot	Q9LPW2	Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana OX=3702 GN=At1g12870 PE=4 SV=2
TrEMBL	A0A803LZI0	F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Atriplex hortensis	13	Ah001920, Ah003798, Ah004407, Ah004408, Ah004409, Ah008157 ... Ah010458, Ah010828, Ah010831, Ah022482, Ah032943, Ah038021, Ah038025
Amaranthaceae	Beta vulgaris	2	BVRB_9g204180, BVRB_9g219200
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17163, Sbi_jg27532, Sbi_jg52462, Sbi_jg61771
Amaranthaceae	Salicornia europaea	3	Seu_jg20871, Seu_jg423, Seu_jg7781
Amaranthaceae	Suaeda aralocaspica	11	GOSA_00000873, GOSA_00000881, GOSA_00011522, GOSA_00011523 ... GOSA_00013418, GOSA_00015200, GOSA_00015210, GOSA_00017501, GOSA_00019733, GOSA_00019734, GOSA_00019739
Amaranthaceae	Suaeda glauca	22	Sgl11782, Sgl17271, Sgl24939, Sgl30083, Sgl33301, Sgl38521 ... Sgl38541, Sgl38559, Sgl45548, Sgl45549, Sgl45550, Sgl45552, Sgl50333, Sgl50335, Sgl50336, Sgl78539, Sgl78553, Sgl78621, Sgl78622, Sgl81029, Sgl81099, Sgl81100
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000016276, gene:ENSEOMG00000021311 ... gene:ENSEOMG00000025450, gene:ENSEOMG00000032638, gene:ENSEOMG00000035631, gene:ENSEOMG00000037957, gene:ENSEOMG00000038425, gene:ENSEOMG00000039745, gene:ENSEOMG00000051485, gene:ENSEOMG00000051554
Amaranthaceae	Chenopodium quinoa	15	CQ.Regalona.r1.3BG0025960, CQ.Regalona.r1.3BG0025970 ... CQ.Regalona.r1.4AG0010490, CQ.Regalona.r1.4BG0020100, CQ.Regalona.r1.4BG0020110, CQ.Regalona.r1.5AG0016500, CQ.Regalona.r1.5AG0016510, CQ.Regalona.r1.5BG0001640, CQ.Regalona.r1.5BG0017780, CQ.Regalona.r1.5BG0020740, CQ.Regalona.r1.7BG0009400, CQ.Regalona.r1.7BG0009410, CQ.Regalona.r1.9AG0013250, CQ.Regalona.r1.9AG0015130, CQ.Regalona.r1.9AG0015140
Poaceae	Lolium multiflorum	1	gene-QYE76_057782