Basic Information
Locus ID:
Ah022465
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 97851770 | 97855811 | - | Ah022465 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 112,574.84 Da | 33.55 | 102.59 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 727 | 991 | 7.35528E-85 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 257 | 285 | 0.026 | IPR013210 |
| Pfam | PF01476 | LysM domain | 119 | 177 | 0.0015 | IPR018392 |
| Pfam | PF01476 | LysM domain | 199 | 238 | 5.5E-7 | IPR018392 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 546 | 584 | 0.028 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 721 | 987 | 3.5E-51 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 337 | 372 | 1.7E-6 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 277 | 655 | 1.09E-42 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 700 | 990 | 2.56E-76 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 194 | 238 | 4.05E-5 | IPR036779 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 256 | 545 | 1.0E-60 | IPR032675 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 117 | 178 | 9.9E-6 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 796 | 1000 | 3.1E-57 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 186 | 245 | 2.2E-8 | IPR036779 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 547 | 672 | 1.6E-32 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 678 | 795 | 1.4E-30 | - |
| SMART | SM00220 | serkin_6 | 721 | 994 | 1.8E-38 | IPR000719 |
| SMART | SM00257 | LysM_2 | 118 | 177 | 0.88 | IPR018392 |
| SMART | SM00257 | LysM_2 | 194 | 238 | 9.3E-6 | IPR018392 |
| SMART | SM00369 | LRR_typ_2 | 358 | 379 | 390.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 610 | 634 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 334 | 357 | 0.012 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 311 | 333 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 408 | 431 | 120.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 721 | 995 | 39.650829 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 193 | 237 | 11.626993 | IPR018392 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 841 | 853 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 727 | 749 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_021749180.1 | receptor-like kinase TMK4 [Chenopodium quinoa] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LZJ6 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology