Basic Information
Locus ID:
Ah021863
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 89967361 | 89968164 | - | Ah021863 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 31,145.82 Da | 44.32 | 96.37 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 233 | 263 | 6.4E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 189 | 266 | 2.32E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 175 | 266 | 8.8E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 196 | 262 | 3.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 196 | 263 | 10.807436 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12210.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021851718.1 | uncharacterized protein LOC110791271 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0R0LSX2 | Putative Zinc finger protein OS=Pseudoloma neurophilia OX=146866 GN=M153_41910001362 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 3 | Ah021863, Ah023740, Ah023745 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000035844, gene:ENSEOMG00000040256 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0010870 |