Basic Information
Locus ID:
Ah021381
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
Casein Kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 76231263 | 76245360 | - | Ah021381 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 142,650.66 Da | 41.95 | 97.72 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14016 | STKc_CK1 | 160 | 434 | 1.03687E-118 | - |
| Pfam | PF13855 | Leucine rich repeat | 747 | 806 | 5.9E-9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 160 | 392 | 9.8E-16 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 1146 | 1204 | 5.7E-11 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 1007 | 1066 | 6.0E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 509 | 555 | 2.9E-7 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 825 | 1210 | 2.12E-52 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 160 | 448 | 8.61E-59 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 534 | 859 | 7.48E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 983 | 1082 | 8.5E-29 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 132 | 480 | 5.8E-79 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 812 | 982 | 3.3E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 505 | 811 | 1.9E-65 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1120 | 1235 | 7.4E-41 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 1167 | 1190 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 745 | 768 | 76.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1143 | 1166 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1053 | 1077 | 5.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1191 | 1214 | 51.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 769 | 793 | 130.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 745 | 774 | 600.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1167 | 1188 | 120.0 | - |
| SMART | SM00369 | LRR_typ_2 | 1005 | 1027 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 697 | 721 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 649 | 673 | 46.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1029 | 1052 | 48.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 649 | 672 | 710.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1005 | 1034 | 86.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1191 | 1219 | 140.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1053 | 1072 | 110.0 | - |
| SMART | SM00220 | serkin_6 | 160 | 438 | 2.1E-11 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 697 | 723 | 280.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1193 | 1215 | 7.673451 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1007 | 1029 | 7.565642 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 160 | 438 | 22.591091 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 285 | 297 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 166 | 197 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 844 | 857 | 1.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 1053 | 1066 | 1.6E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 69 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03940.1 | Protein kinase family protein. | 0 |
| RefSeq | XP_021738268.1 | casein kinase 1-like protein HD16 [Chenopodium quinoa] | 0 |
| Q852L0 | Casein kinase 1-like protein HD16 OS=Oryza sativa subsp. japonica OX=39947 GN=HD16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MN38 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |