Basic Information
Locus ID:
Ah021070
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
geranylgeranyl transferase type-2 subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 62527882 | 62533582 | + | Ah021070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 15,058.75 Da | 40.62 | 74.86 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48239 | Terpenoid cyclases/Protein prenyltransferases | 50 | 89 | 2.13E-6 | IPR008930 |
| Gene3D | G3DSA:1.50.10.20 | - | 39 | 96 | 4.2E-8 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12210.2 | RAB geranylgeranyl transferase beta subunit 1. | 0 |
| RefSeq | XP_022742712.1 | geranylgeranyl transferase type-2 subunit beta 1 isoform X2 [Durio zibethinus] | 0 |
| Q84J75 | Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702 GN=RGTB1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J7GFU3 | Transposase OS=Camellia sinensis OX=4442 GN=HYC85_023444 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29767 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1269 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah021070, Ah023371 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29050, Sbi_jg3270 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6661 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000086 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11522, Sgl17020 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013060, gene:ENSEOMG00000033812 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0008000, CQ.Regalona.r1.2BG0021470 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049950 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G004210 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G04126 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G17668.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021734m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g15800.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g047160.2N, BniB07g052440.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g05870 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0630s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g04610 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.8 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032540 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01761 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2104, BH09.2271, CH09.2416 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0196830.1 |
| Poaceae | Oryza coarctata | 2 | Oco07G014430, Oco08G013880 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g49940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G207800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301570, Pt_Chr0302093 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr30G004310 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G766400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG064400, gene_TRIDC2BG068690 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G451100.1, TraesCS2B02G472600.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-22693 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20327 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG19.474, evm.TU.LG23.48, evm.TU.LG24.614 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g00180 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.20 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14527 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.363 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009960 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-223 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22100 |
| Salicaceae | Populus euphratica | 4 | populus_peu26698, populus_peu26744, populus_peu37834 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611341 |
| Solanaceae | Solanum chilense | 1 | SOLCI005525300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021628 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32729_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0227 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01150.v3.1 |