HalophFGD

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Basic Information
Locus ID: Ah021035
Species & Taxonomic ID: Atriplex hortensis & 34272
Genome Assembly: Atriplex hortensis v2.0
Description: protein dimerization activity
Maps and Mapping Data
Chromosome Start End Strand ID
Scaffold_390_HRSCAF_510 61199480 61200220 + Ah021035
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.57 16,481.56 Da 45.70 80.75 -0.45
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF02892 BED zinc finger 25 69 1.5E-4 IPR003656
SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers 25 74 7.5E-5 IPR036236
SMART SM00614 bed5 22 73 1.8E-12 -
ProSiteProfiles PS50808 Zinc finger BED-type profile. 22 73 9.908108 IPR003656
Gene Ontology
Molecular Function:
GO:0003677 (DNA binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_021841443.1 zinc finger BED domain-containing protein DAYSLEEPER-like [Spinacia oleracea] 0
TrEMBL A0A803MTF4 BED-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 1 jg24259
Aizoaceae Mesembryanthemum crystallinum 1 gene_24363
Amaranthaceae Atriplex hortensis 2 Ah001568, Ah021035
Plantaginaceae Plantago ovata 1 Pov_00009261
Plumbaginaceae Limonium bicolor 1 Lb3G21155
Poaceae Triticum aestivum 1 TraesCS6D02G013700.1
Solanaceae Lycium barbarum 1 gene-LOC132629007
Solanaceae Solanum chilense 1 SOLCI004251100
Solanaceae Solanum pennellii 1 gene-LOC107032162
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