Basic Information
Locus ID:
Ah020888
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 55452864 | 55466262 | + | Ah020888 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 12,656.46 Da | 13.05 | 106.87 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 44 | 104 | 1.8E-8 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 24 | 102 | 4.21E-9 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 6 | 108 | 2.6E-9 | IPR036770 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 81 | 102 | 10.179323 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 81 | 102 | 10.20539 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_021731376.1 | E3 ubiquitin-protein ligase XBAT32-like [Chenopodium quinoa] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9CMA4 | ANK_REP_REGION domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology