Basic Information
Locus ID:
Ah020750
Species & Taxonomic ID:
Atriplex hortensis & 34272
Genome Assembly:
Atriplex hortensis v2.0
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Scaffold_390_HRSCAF_510 | 49238521 | 49241351 | + | Ah020750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 26,294.99 Da | 50.33 | 69.82 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 160 | 218 | 1.2E-27 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 7 | 51 | 4.3E-11 | IPR008913 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 113 | 155 | 3.5E-6 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 111 | 160 | 7.07E-10 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 6 | 40 | 1.83E-6 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 186 | 3.2E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 187 | 224 | 3.1E-18 | - |
| SMART | SM00184 | ring_2 | 113 | 155 | 7.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 113 | 156 | 11.441815 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 41 | 112 | 14.329019 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1 | 39 | 11.87727 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021725233.1 | E3 ubiquitin-protein ligase MIEL1-like isoform X3 [Chenopodium quinoa] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MUD8 | E3 ubiquitin-protein ligase MIEL1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology